PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g14840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 324aa    MW: 36126.5 Da    PI: 7.2367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g14840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.8e-10132179455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Vradi05g14840.1 132 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 179
                      8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.00E-10126183No hitNo description
SuperFamilySSF474594.71E-17126196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17128195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLHCANTSGN LAGDMTVWER QRARMKWQEE QGPTGSSIGK ESSKKRKPEK LHSAKFVTEN  60
DTKDKRIKLG SDDDEQSKIT GSPNSNANTD TNKRETCADT SNSKQNSKVS EIQNQKPDYI  120
HVRARRGQAT DSHSLAERVR REKISERMKY LQDLVPGCNK ITGKAGMLDE IINYVQSLQR  180
QVEFLSMKLA AVNPRLDLSI DDLFEKEVFP CAANFPNIGM SSDLTNSGYV QFNSPQEMVS  240
YGGLDTVINP PYMGLKRSIS AHVSVPETYL HSSSFTQLLP SSTWEGDFQN LLNLDFDQVR  300
ATSFPSHLSS GLVEAGNHLK MEM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-104AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499846.10.0PREDICTED: transcription factor bHLH63-like
SwissprotQ8GY612e-57BH063_ARATH; Transcription factor bHLH63
TrEMBLA0A0L9UHE40.0A0A0L9UHE4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R9Z50.0A0A0S3R9Z5_PHAAN; Uncharacterized protein
STRINGGLYMA06G01430.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-58cryptochrome-interacting basic-helix-loop-helix 1